Timeline for Managing path for reproductible scientific paper using session, org-babel and org-mode
Current License: CC BY-SA 4.0
13 events
| when toggle format | what | by | license | comment | |
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| Oct 6, 2020 at 14:06 | vote | accept | reyman64 | ||
| Oct 5, 2020 at 22:15 | history | edited | Tyler |
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| Oct 5, 2020 at 22:14 | answer | added | Tyler | timeline score: 2 | |
| Oct 5, 2020 at 10:06 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Jun 7, 2020 at 13:57 | comment | added | Melioratus | Thanks for asking your question! As @mankoff mentioned recoding those blocks will be very helpful. In addition, most org-mode SRC headers & properties will accept elisp code to dynamically set values at run time to change paths, turn on or off features, auto kill sessions, prompt for user input, etc. There are many excellent answers on emacs sx about these issues & your question provides an opportunity to pull these separate answers into a comprehensive answer for others. | |
| Jun 7, 2020 at 9:03 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Feb 8, 2020 at 9:03 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Jan 9, 2020 at 20:49 | comment | added | mankoff |
We already address cd mproject/: use absolute paths. For the git command, you could: [[ -d myproject ]] || git clone.... But your issues now aren't about Org Mode or Org Babel anymore. These are just generic coding issues about how to write code that behaves properly if it is run multiple times. You'll have these same issues regardless of Org.
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| Jan 9, 2020 at 18:52 | comment | added | reyman64 | By unstable state, i mean, if you rerun interactivly previously runned command (git clone myproject or cd myproject/ for example), weird things happen. | |
| Jan 9, 2020 at 16:52 | comment | added | mankoff | You say, "you cannot use interactive evaluation without creating an unstable state in your shell session" but it isn't clear to me why this is the case. What is unstable? | |
| Jan 9, 2020 at 8:56 | history | edited | reyman64 | CC BY-SA 4.0 |
added 1056 characters in body
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| Jan 8, 2020 at 23:02 | answer | added | mankoff | timeline score: 1 | |
| Jan 8, 2020 at 21:33 | history | asked | reyman64 | CC BY-SA 4.0 |