I'm struggling to set up Org-Roam on a minimal GUIX set-up. There is an attempt to compile Compiling EmacSQL SQL binary which throws an error No EmacSQL SQLite binary available. I have installed both gcc and clang and the correct path (ie. the same as is returned by which gcc) is found using eg. (executable-find "clang") (the code tries gcc before clang so I have tried removing the former with the same results). With apologies, I am typing out a couple of lines of the *Backtrace* as my GUIX is a very minimal writing set-up but the first two lines are the following:

error("No EmacSQL SQLite binary available, aborting")

This error is thrown by, for example, running (org-roam-node-find) The *Backtrace* shows a call to make-instance(emacsql-sqlite-connection :file "~/.emacs.d/org-roam.db") followed by a number of calls such as apply(#f(compiled-function (&rest args) #<bytecode [...])(#<emacs-sqlite-connection emacsql-sqlite-connection-[...]> (:file "~/.emacs.d/org-roam.db")).

A file named emacsql-sqlite.elc (7.4k) exists in a directory in .emacs.d/elpa/emacsql-sqlite-20230118.2015. Another directory exists in .emacs.d/elpa/ named emacsql-20230118.2020. These directories are repopulated upon running (org-roam-node-find) when they are deleted or moved.

Internet searches have thrown up problems with Windows and Mac OS all of which appear to be resolved by installing gcc or clang.

  • You should install the sqlite3 package using your distro's package manager. This is not an Emacs problem.
    – NickD
    Commented Jan 25, 2023 at 22:39
  • It is installed. Typing sqlite3 in eshell takes me to a SQL prompt, typing which sqlite3 gives me its location, and executing (executable-find "sqlite3") in the *scratch* buffer gives me the same location.
    – krozruch
    Commented Feb 1, 2023 at 13:13
  • If you look at how emacsql-sqlite-ensure-binary tries to find the binary, it does (file-exists-p emacsql-sqlite-executable) - so you have to set emacsql-sqlite-executable to the full path of the binary you found above. In particular, it is not using executable-find.
    – NickD
    Commented Feb 1, 2023 at 14:50

1 Answer 1


The OP checked that the sqlite3 binary is installed on his system and can be found by shells and through the executable-find mechanism. But the emacs-sqlite package uses emacsql-sqlite-ensure-binary (as the error message shows) and that uses its own mechanism:

;;; Ensure the SQLite binary is available

(defun emacsql-sqlite-ensure-binary ()
  "Ensure the EmacSQL SQLite binary is available, signaling an error if not."
  (unless (file-exists-p emacsql-sqlite-executable)
    ;; try compiling at the last minute
    (unless (ignore-errors (emacsql-sqlite-compile 2))
      (error "No EmacSQL SQLite binary available, aborting"))))

So the variable emacsql-sqlite-executable has to be set to the full path of the sqlite3 executable for this to work. Add the setting to the init file:

(setq emacsql-sqlite-executable "/path/to/sqlite3")
  • This is useful and I expected it to resolve the issue but it doesn't. Not yet. I'm picking this apart in *scratch*. (file-exists-p emacsql-sqlite-executable) reports true here but appears to evaluate as false in emacsql-sqlite.el. In the Scratch buffer, (emacsql-sqlite-ensure-binary) returns nil. I may try the guix irc or something here and will return to answer below if something turns up.
    – krozruch
    Commented Feb 2, 2023 at 9:38
  • Check to see what the (emacsql-sqlite-compile 2) call does: if it fails, then dig into that functions to see why it fails.
    – NickD
    Commented Feb 2, 2023 at 13:17
  • IOW, it's not that file-exists-p that returns different things in the two contexts (it's hard to imagine how that would happen). Instead, it's that emacsql-sqlite-ensure-binary fails because the other function that it calls (i.e. emacsql-sqlite-compile) fails.
    – NickD
    Commented Feb 2, 2023 at 14:14
  • Apologies for taking some time to mark this correct.. It gave me what I needed to debug this problem. The Guix set-up is intentionally a minimal writing set-up I tend to run offline and being variously neurodivergent I tend to be contextually either here or there.. I intended to document my debugging process but it's now a long time ago. From memory it related to misspellings of variables such as, I presume, emacsql-sqlite-executable.
    – krozruch
    Commented Apr 17, 2023 at 16:33

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