Questions tagged [ess]

ESS (Emacs Speaks Statistics) is an emacs add-on for editing scripts and interacting with statistical programs such as R, Stata or SAS.

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27 views

How to pass bash commands from a script to terminal?

Let's say I have a bash script. Is there a way I can pass specific lines or blocks in the script to terminal process in EMACS? Just like how we do for R script using command C-c R
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1answer
560 views

ESS install fails on Ubuntu 18.04

I had previously installed and used Emacs 25.2.2 and ESS 17.11 on Ubuntu 18.04 (Bionic Beaver). While attempting to update to the latest version of ESS, the ESS install script appears to have failed (...
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2answers
111 views

Break (C-c C-c) in ESS-remote R shell

I am running my R scripts on a remote shell using M-x shell ssh -X -C name@server.edu srun -p nodeX --pty R (slurm command to start R) M-x ess-remote and select 'R' everythink works fine, until I ...
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0answers
27 views

Stop Emacs From Moving Text / Point to Bottom of Screen

I don't fully understand what is happening but I would like it to stop - I am using org-mode and ESS, and when I am in an R src block, things like hitting tab to auto-indent a line of code cause point ...
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0answers
25 views

Company-mode slow in ESS

When using (i)ESS, I would like to function/variable/argument/filename completion on demand using the minibuffer, without triggering the company pseudotooltip front end. I have tried the following: (...
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0answers
21 views

No filename completion with Eglot and R

Using ESS with emacs I have automatic filename completion. So, when I am withing "./" and hit TAB, it shows me a list of files and directories within that directory. However, after installing eglot ...
1
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2answers
84 views

Problem Committing with Magit

I'm a relatively new convert to emacs and a very new convert to Mac. After installing Emacs using the ESS installer (Version 18.10.2). When I attempt to state a file for commit I receive the ...
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1answer
75 views

Emacs 26.3 cannot call R

After updated to macOS Catalina (10.15) I've been trying to use R in Emacs 26.3. However, Emacs is not fetching R by using M-x R (Emacs says [No match]). I already checked the paths for both R and ...
2
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1answer
258 views

Flycheck r-lintr doesn't find anything

I want to use lintr to check R-files in emacs. According to https://github.com/jimhester/lintr#emacs lintr is fully integrated into flycheck when using ESS. See the installalation documentation ...
4
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2answers
411 views

Unable to install ESS package

I want to install ESS. I initialised the package manager with (require 'package) (add-to-list 'package-archives '("melpa-stable" . "https://stable.melpa.org/packages/")) (package-...
3
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1answer
134 views

How to get documentation link in ESS R?

In RStudio, the documentation pane display not just the help file but also links to other help files (see link to aov below). How to get the same in ESS R?
5
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1answer
200 views

Emacs busy while evaluating R in ESS

When using Emacs with ESS, when I evaluate functions that take longer to complete (reading in larger files or executing SQL queries), the whole Emacs becomes busy (freezes, hangs, crashes - whatever ...
3
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1answer
140 views

How to display *help* buffers below one specific window?

I am (really) new in Emacs and ESS, and I am currently trying to customize my environment. The default settings of ESS[R] are convenient for me, since ESS[R] organizes the windows as follows: --------...
3
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1answer
68 views

Run R code on selected object

I am missing (or not aware) of a feature in ESS to run some R code on selected text. When editing a script, like df1 <- data.frame(a=1:100,b=rnorm(100)) I often want to see head(df1) in my ...
1
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1answer
27 views

remove keybinding from ess-extra-map

Related: https://stackoverflow.com/questions/7598433/how-to-remove-a-key-from-a-minor-mode-keymap-in-emacs How can I find out in which keymap a key is bound? There is a default keybinding in ESS ...
5
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3answers
79 views

Sending `C-c C-c` to the process window without swithcing to it

In ESS mode, I sometimes send some code to the process buffer and want to cancel it using C-c C-c. Can I do this without actually switching to the process window from the script window?
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1answer
927 views

ESS R error: searching for program

I have installed emacs on windows 10 working ok so far. Installed R and ESS. Set system and user path to Rterm.exe as read in some forums. Restarted and opened a R file in emacs. Syntax coloring is ...
0
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1answer
73 views

Evaluate single line of python code from Emacs org-babel

Consider a block of python code in an org-mode document: #+begin_src python num1 = input("Enter a number: ") num2 = input("Enter another number: ") result = float(num1) + float(num2) print(result) #...
3
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1answer
65 views

imenu in ess-mode: recognize assignment with “=”

Is there a way to configure the imenu integration in ESS-mode so that it recognizes assignment by the equal sign "=", not only by arrow "<-"? I'm switching between R and python so I've switched to ...
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2answers
97 views

underscore (“_”) randomly stops working for ESS

I am using iESS console and editor (ESS) for R programming, and often times (and randomly) the _ stops resulting in <-. To temporarily hack it, I found that I could use ess-toggle-underscore or ...
2
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1answer
55 views

Polymode changes from ESS-mode to Markdown-mode whenever I press enter

When I am editing .Rmd file within a polymode chunk, the mode switches from ESS to Markdown mode whenever I press enter. However, it switches back to ess-mode whenver I save the file. I will try ...
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0answers
27 views

Using R double colon operator messes up the indentation in emacs

Using R double colon operator messes up the indentation in ess/emacs. For example, df <- map( xyz, something ) vs. df <- purrr::map( xyz, something) ...
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0answers
98 views

Can we get inline results with polymode for Rmd files?

As a new Emacs user, I've recently learned how to use polymode to handle R code in org-mode. I'm happy with it, since I get the same features than those implemented for example in Rstudio for Rmd ...
0
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1answer
371 views

ESS installation does not initialize flymake

I install ESS following these directions, adding these to ~/.emacs: (require 'package) (add-to-list 'package-archives '("melpa-stable" . "https://stable.melpa.org/packages/")) (add-to-...
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0answers
48 views

How to specify a pdf viewer for ess mode

I have set the variable ess-pdf-viewer-pref to "evince" But when I export any Rnw file using M-n e, instead of displaying the pdf in evince it is displayed inside Emacs. How can I stop Emacs ...
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0answers
43 views

Compile multiple Rnw files

If we divide our Rnw file into multiple files, is it possible to create the whole document using knitr and LaTeX in Emacs by pressing M-n e on a child file? I guess the process above should be ...
1
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0answers
48 views

Emacs plugin to browse Julia documentation, at point or textual

It is quite annoying that I have to leave emacs to browse Julia documentation. Are there any nice plugins to get the documentation at point or that provides a nice direct textual interface to the ...
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0answers
35 views

Projectile renaming buffer name causing issues with ESS (ctrl enter) functionality

I have recently installed projectile package into my Emacs. It's great package, however, now my C-RET binding to ESS (R) is not working any more. Part of my current init.el related to ESS looks like ...
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0answers
35 views

ESS knitr workflow with natbib

This solution explains ESS knitr workflow and it works as explained. However, it does not explain how to knit an Rnw file containing natbib references. Similar question have been asked here and the ...
4
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1answer
72 views

Send content of region or current line to a tmp file, then execute shell script with filename as argument

I am transitioning to Emacs with evil-mode after years of Vim. For work reasons I have to use a GUI statistics program (Stata) frequently. This program does not integrate well with external editors. ...
4
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1answer
715 views

How to increase C stack size for R in ESS?

I can not figure out how to change the C stack size for R in ESS. I can change it in terminal as follows: X:~$ ulimit -s 8192 X:~$ R --slave -e 'Cstack_info()["size"]' size 7969177 X:~$ ulimit -...
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0answers
35 views

How to “manipulate” using R in Emacs

In Rstudio one can use library manipulate to interactively change the plot over some parameters(mu). When you use this in emacs ESS it gives error: function(mu){ plot(mu) } manipulate(myfunc(mu),mu = ...
18
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2answers
3k views

how to setup Knitr workflow in Emacs?

RStudio provides a one-button way for produce PDF file from LaTeX+R source with Knitr. It looks great for doing reproducible research. And I am trying to configure my Emacs for: at left buffer LaTeX+...
2
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1answer
98 views

ESS Syntax Highlighting for Negative Numbers?

I know how to set coloring for an interactive R session in ESS + Emacs for all numbers. Is there a way to drill down further and set different colors for negative numbers?
5
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1answer
499 views

What is the difference between the knitR and knitR-ESS for polymode?

I have recently setup polymode for use with Rnw and Rmd files. When it came to knit/weave a document I was given the choice of four defaults; knitR-ESS, Sweave, knitR and Sweave-ESS. I usually use ...
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0answers
35 views

Setting up Knittr workflow in Emacs [duplicate]

I was a happy ESS and R user to obtain tex and pdf files from Rnw file with sweave and knitr. I have followed the answer given here, everything worked fine but after several updates or maybe new ...
1
vote
1answer
65 views

emacs opens ESS/R buffer in random window

I'm using emacs 26.1 with ESS. Whenever I open a R session with M-x R it opens in a random window. However, I would like it to open in the currently selected window. It seems to be a similar issue as ...
1
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1answer
180 views

ESS smart underscore does not work in emacs25

Previously when I used the underscore key in my keyboard ESS replaced it for the assigment keys <-. In emacs25 that no longer happens. I have installed the ESS package from MELPA, as well as, it's ...
1
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0answers
151 views

Missing RMarkdown templates with poly-R

I use the ess, polymode, and poly-R packages together to work with RMarkdown files. I have also installed the R packages rmarkdown and tufte in my R library. While these R packages provide ".Rmd" ...
2
votes
1answer
415 views

ESS poly-R issue

I am trying to setup ESS with polymode and poly-markdown I have the following in my myinit.org file which becomes compiled into init.el ;; https://polymode.github.io/installation/ (use-package ...
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0answers
50 views

R in ESS outputs UTF-8, which emacs renders raw

I find the question but no answer at Emacs ESS R - Message Content Encoding and Display Issue. In buffer *R*, the R process uses UTF-8 encoding for its output. However emacs does not decode that ...
4
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2answers
993 views

Disable smart underscore for good ESS

I am trying to disable the underscore thing in ESS where it gets converted to a <- . If I add (add-hook 'ess-mode-hook (lambda () (ess-toggle-underscore nil))) To my init file, it works ...
2
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0answers
31 views

gnu screen emacs ess: M-X R freeze

I just pick up emacs after a while with Vim. This is run on CentOS server. I ssh to the server, and start with gnu screen, and emacs ess, when I start to run R, emacs just freeze. Here is what I ...
3
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0answers
186 views

“error in process sentinel” whenever using %>% in an ESS R buffer

Whenever I include a pipe (%>%) in a ESS R buffer, I start getting the following error repeatedly, with lags that make editing almost impossible: error in process sentinel: Not enough arguments ...
3
votes
1answer
44 views

How to copy output from ess to the kill ring?

Q: how can I automatically copy output from ess to the kill ring? Background I use ess to conduct statistical analysis. On occasion, I need to copy its raw output into another buffer (usually ...
2
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0answers
126 views

Emacs freezes using Sweave and ESS

I am using Emacs + ESS + Sweave to write a document. When I do multiline copy of noweb commands using M-w, switch to R buffer and execute them (C-y, RET), Emacs will sometimes freeze, forcing me to ...
10
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2answers
720 views

Can Emacs use tramp to run in an interactive session on a remote HPC node?

I have been using Emacs with ESS and tramp to load remote files and run remote R processes on HPC computers. With ssh keys, tramp makes this easy with C-x C-f to find file at /ssh:myserver:/path/to/...
1
vote
1answer
186 views

How to jump to R source code with ESS?

Q: how can I get to the source code of R packages using ESS? When I'm working with elisp, I can access the source code for any package easily with find-library or by following the links in find-...
1
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1answer
168 views

Tramp and X11 forwarding when changing user (su)

I can connect to a remote server with Tramp C-x C-f /ssh:group@remotehost: and get a plot output window (with ess R). But if I change user C-x C-f /ssh:group@remote|su:user@remote: there's no X11 ...
0
votes
1answer
330 views

autoload-do-load: Wrong type argument: consp, nil

I've encountered a problem after upgrading Emacs Speaks Statistics (ESS) from MELPA today to ess-20180926.54. When I try to start an R session under Emacs with M-x R I'm informed... autoload-do-load:...