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In elpy 1.32.0 (elpy-enable) (setq elpy-shell-starting-directory 'current-directory) ;; default is 'project-root worked for me. ref: Documentation


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I am using configuration per project. The configuration filesetup.cfg is needed at root folder of your project. Below is my setting in setup.cfg. [flake8] max-line-length = 120 [pycodestyle] max_line_length = 120 [yapf] column_limit = 120


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